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There is very very little that can be done to change the UI of MO.
@Yla: That's a very cool graph! :-) Am I correct that the arrows in the diagram are the reverse of links in the questions---in other words, if post A links to post B, there is an arrow from B to A? This seems to be your explanation ("from the original question that was being linked to to the question that linked to it"). I might suggest reversing the arrows to match the link direction, which seems much more natural to me, just from a human-factors/psychology viewpoint.